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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172736332_172744396_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172736332 - 172744396
Intron Length:
8065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GGGTGAGTATCC
Flanking Amino Acid:
QAKVIKLEEERQGSYQANSL
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
80.8
0.69
0.9
78.1
30.7
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
35.5
-1.1
2.4
44.76
43.1

Associated Gene:

Gene:
AMOTL1
Ensembl Gene ID:
ENSAPLG00000002742
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047476
172730224 - 172769731
39508