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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172751744_172752603_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
172751744 - 172752603
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATACTTAAAG
Flanking Amino Acid:
RLHDFNRDLRERLETANRQL
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
74.6
31
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.3
0.86
0.7
84
31
Minor 5ss
45.7
-0.4
2.5
54.4
45.2
Minor BPS
66
0.36
1.7
71.17
41

Associated Gene:

Gene:
AMOTL1
Ensembl Gene ID:
ENSAPLG00000002742
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047476
172730224 - 172769731
39508
ENSAPLT00000035646
172728044 - 172772143
44100
ENSAPLT00000002791
172730582 - 172769731
39150