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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172752749_172758361_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172752749 - 172758361
Intron Length:
5613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TAGGCTTTCATG
Flanking Amino Acid:
YYEKADKLQKFEIEIQRISE
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.6
39.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
87.1
0.84
0.7
84.7
23
Minor 5ss
31
-2.2
3.3
40.9
45.3
Minor BPS
47.4
-0.3
1.9
51.46
44

Associated Gene:

Gene:
AMOTL1
Ensembl Gene ID:
ENSAPLG00000002742
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002791
172730582 - 172769731
39150
ENSAPLT00000047476
172730224 - 172769731
39508
ENSAPLT00000035646
172728044 - 172772143
44100