Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172758630_172768892_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

172758630 - 172768892

Intron Length:

10263

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGGCT

5'SS Class:

strong_major

3'SS Sequence:

TGCTTCCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

GCAGCTCTGACA

Flanking Amino Acid:

YQPPPEYGVTSRQCQPPFPA

Intron Amino Acid Position:

280

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

73.2

34.8

Major BPS

69.1

0.47

60.7

37.6

Major PPT

75.4

0.57

0.8

69.7

31.1

Minor 5ss

30.5

-2.2

3.8

47.1

48.5

Minor BPS

46.3

-0.2

1.7

52.14

39.9

Associated Gene:

Gene:

AMOTL1

Ensembl Gene ID:

ENSAPLG00000002742

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035646

172728044 - 172772143

44100

ENSAPLT00000002791

172730582 - 172769731

39150

ENSAPLT00000047476

172730224 - 172769731

39508