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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172769563_172769666_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
172769563 - 172769666
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGCAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCAAC
U12 Branch Point Sequence:
CTCTCTTCCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.5
39.2
Major BPS
49.8
-0
1.2
60
34.3
Major PPT
80.4
0.68
0.7
75.4
26.8
Minor 5ss
36.2
-1.6
3.2
46.5
48.8
Minor BPS
49.2
-0
2
62.68
44.2

Associated Gene:

Gene:
AMOTL1
Ensembl Gene ID:
ENSAPLG00000002742
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035646
172728044 - 172772143
44100