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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172848694_172852352_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
172848694 - 172852352
Intron Length:
3659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCATCTTC
5'SS Class:
major
3'SS Sequence:
AAATTATTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTGTTTTAACA
Flanking Amino Acid:
EEYSIKHPAAVSLEGIWSLK
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.3
66
40.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
65.9
0.36
1.1
59.8
44.2
Minor 5ss
43.9
-0.7
2.9
59.8
44.7
Minor BPS
71.3
0.66
1.3
76.76
34.5

Associated Gene:

Gene:
C11orf97
Ensembl Gene ID:
ENSAPLG00000019178
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042990
172848551 - 172853333
4783