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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172860184_172860872_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172860184 - 172860872
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTATATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTGTATTAAAAT
Flanking Amino Acid:
EILEQAQKNEVDFVLLGGDL
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
79
0.65
1
73.8
40
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
51.3
0.12
1.9
73.84
43

Associated Gene:

Gene:
MRE11
Ensembl Gene ID:
ENSAPLG00000021936
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031038
172859963 - 172863495
3533