Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172861034_172861616_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

172861034 - 172861616

Intron Length:

583

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTCCC

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTCATTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

AATAATTTAACT

Flanking Amino Acid:

SDQAVNFQYSKFPWVNYQDG

Intron Amino Acid Position:

111

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

72.6

37.3

Major BPS

100

1.24

0.5

100

Major PPT

86.3

0.82

0.8

85.4

28.2

Minor 5ss

37.2

-1.4

2.9

46.5

35.3

Minor BPS

64.5

0.53

1.5

77.76

37.9

Associated Gene:

Gene:

MRE11

Ensembl Gene ID:

ENSAPLG00000021936

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031038

172859963 - 172863495

3533