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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172910166_172910270_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
172910166 - 172910270
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
TGGTACAATTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATAAACC
Flanking Amino Acid:
SLYLLFLEENTDTVDGKPGT
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.2
73.7
32.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
53
0.07
1.2
54.8
43.9
Minor 5ss
27.9
-2.5
3
30.1
36.3
Minor BPS
52.4
0.06
2.3
75.46
41.2

Associated Gene:

Gene:
PANX1
Ensembl Gene ID:
ENSAPLG00000016177
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030737
172908211 - 172933061
24851