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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172910740_172911321_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
172910740 - 172911321
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ATCTATGTGATT
Flanking Amino Acid:
IPTANENPAQSLWEISESHF
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
88.3
0.86
0.7
80.7
31.3
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
45.7
-0.2
2.1
65.3
40

Associated Gene:

Gene:
PANX1
Ensembl Gene ID:
ENSAPLG00000016177
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030737
172908211 - 172933061
24851
ENSAPLT00000016873
172908211 - 172933061
24851