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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172911546_172922238_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172911546 - 172922238
Intron Length:
10693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTATG
5'SS Class:
major
3'SS Sequence:
TTTCTTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CTAACGTGAACT
Flanking Amino Acid:
LENIPLWLHKFFPYILLLVA
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
75.7
40.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
90.7
0.92
0.6
89.3
19.6
Minor 5ss
40
-1.1
3
51
39.8
Minor BPS
48.9
-0
2.2
70.65
45.6

Associated Gene:

Gene:
PANX1
Ensembl Gene ID:
ENSAPLG00000016177
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030737
172908211 - 172933061
24851
ENSAPLT00000016873
172908211 - 172933061
24851