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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172939562_172940031_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172939562 - 172940031
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCAAG
5'SS Class:
major
3'SS Sequence:
TATTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATATCTGTAATA
Flanking Amino Acid:
VYYSTVNFVKDTYSGLIGPL
Intron Amino Acid Position:
895

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.7
41.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.1
0.79
0.8
82.5
33.5
Minor 5ss
38.8
-1.3
2.8
48.4
47.4
Minor BPS
57.9
0.24
2
70.19
36.4

Associated Gene:

Gene:
HEPHL1
Ensembl Gene ID:
ENSAPLG00000015713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016404
172936343 - 172968966
32624