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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172942495_172943326_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
172942495 - 172943326
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTGCTTTAATT
Flanking Amino Acid:
TEEEEHLEILGPLLHAEVGD
Intron Amino Acid Position:
812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
83.4
35
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
72.3
0.5
0.9
71.1
38.8
Minor 5ss
26.7
-2.7
3.7
34.1
41.4
Minor BPS
73.8
0.82
1.3
82.98
39.3

Associated Gene:

Gene:
HEPHL1
Ensembl Gene ID:
ENSAPLG00000015713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016404
172936343 - 172968966
32624