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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172949275_172951980_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
172949275 - 172951980
Intron Length:
2706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGCTTCTCAACT
Flanking Amino Acid:
KLSEGAPYLDGYMKPGAHVK
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
86.5
0.82
0.7
81.3
23.7
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
68
0.64
1.5
80.64
41.1

Associated Gene:

Gene:
HEPHL1
Ensembl Gene ID:
ENSAPLG00000015713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016404
172936343 - 172968966
32624