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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172952113_172952266_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
172952113 - 172952266
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGGTGA
5'SS Class:
major
3'SS Sequence:
CTCTTTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CCTTCCGTAACT
Flanking Amino Acid:
PKNMKHLGILGPVIKAEVGD
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
61
40
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78
0.63
1
82.6
26.5
Minor 5ss
42.3
-0.8
3.1
52.5
46.6
Minor BPS
66.9
0.61
2.1
83.33
44.1

Associated Gene:

Gene:
HEPHL1
Ensembl Gene ID:
ENSAPLG00000015713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016404
172936343 - 172968966
32624