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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172952407_172953127_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
172952407 - 172953127
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTAAATCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
AGTAATTTAACC
Flanking Amino Acid:
FTGQGLNATGSESAIYFTQG
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
66.7
0.38
1
58.3
41.8
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
60.6
0.31
1.5
67.66
37.2

Associated Gene:

Gene:
HEPHL1
Ensembl Gene ID:
ENSAPLG00000015713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016404
172936343 - 172968966
32624