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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172953297_172954385_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
172953297 - 172954385
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAGAC
U12 Branch Point Sequence:
TGTCTCCAGACT
Flanking Amino Acid:
ITCQVNEHLRGGMEALYDVQ
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
51.6
0.04
1.1
48.6
36.6
Major PPT
84.7
0.78
0.7
77.3
31.4
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
47
-0.1
2
69.95
40.8

Associated Gene:

Gene:
HEPHL1
Ensembl Gene ID:
ENSAPLG00000015713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016404
172936343 - 172968966
32624