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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172954641_172955691_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
172954641 - 172955691
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
CTTTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CTCTCTTAAAGT
Flanking Amino Acid:
DGFQTSNRMHALNGYIYGNL
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.4
44.7
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
33.5
-1.9
2.8
36.6
41.8
Minor BPS
52.2
0.15
2
70.57
47

Associated Gene:

Gene:
HEPHL1
Ensembl Gene ID:
ENSAPLG00000015713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016404
172936343 - 172968966
32624