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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172958924_172968431_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
172958924 - 172968431
Intron Length:
9508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCAATGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TAGTCTCTAAAT
Flanking Amino Acid:
LITGQSLLEDKFASVYATRG
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
69.8
0.45
1
63
42
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
57.8
0.32
1.8
75.3
41.1

Associated Gene:

Gene:
HEPHL1
Ensembl Gene ID:
ENSAPLG00000015713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016404
172936343 - 172968966
32624