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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172986106_172989453_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172986106 - 172989453
Intron Length:
3348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTCTATGAATT
Flanking Amino Acid:
FHGILGAGILAILPAFMMLG
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
67.8
37.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
81.5
0.71
0.8
75.8
32.8
Minor 5ss
29.9
-2.3
3.3
35.1
42.4
Minor BPS
57.5
0.31
1.7
79.48
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015524
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036040
172982028 - 172996126
14099
ENSAPLT00000016181
172983085 - 172996126
13042