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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172995594_172996105_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172995594 - 172996105
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTATG
5'SS Class:
major
3'SS Sequence:
CATTGCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCATT
Flanking Amino Acid:
CICGTCMRKKTNILGM*
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
73.9
42.7
Major BPS
100
1.24
0.5
100
0
Major PPT
78.1
0.63
0.9
73.7
36.6
Minor 5ss
34.3
-1.8
2.9
42.3
44.5
Minor BPS
65.8
0.58
2
89.07
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015524
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036040
172982028 - 172996126
14099
ENSAPLT00000016181
172983085 - 172996126
13042