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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173003618_173005300_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
173003618 - 173005300
Intron Length:
1683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TCACTTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATGCTATTAAAA
Flanking Amino Acid:
PLGFALSLVIGGFFFVNPMR
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
80.7
33.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
72.1
0.5
1
68.3
37.3
Minor 5ss
37.2
-1.4
3
51.6
45.1
Minor BPS
50.1
0
1.7
61.69
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015429
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016078
173002302 - 173010185
7884