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Intron Name: Anas_platyrhynchos_platyrhynchos_1_173028621_173030240_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

173028621 - 173030240

Intron Length:

1620

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATCTAAG

5'SS Class:

major

3'SS Sequence:

CTTTCATTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAT

U12 Branch Point Sequence:

TATCCTTTCATT

Flanking Amino Acid:

LFQKTTHKLSASTTEEIELE

Intron Amino Acid Position:

179

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

1.2

70.6

41.3

Major BPS

0.75

78.6

Major PPT

86.5

0.82

0.7

29.7

Minor 5ss

46.7

-0.3

2.3

59.2

45.4

Minor BPS

60.8

0.42

1.7

78.34

38.2

Associated Gene:

Gene:

VSTM5

Ensembl Gene ID:

ENSAPLG00000015398

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047632

173027896 - 173030564

2669

ENSAPLT00000016044

173025192 - 173030284

5093

ENSAPLT00000016038

173026424 - 173030284

3861