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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173035257_173036069_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
173035257 - 173036069
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTGTCCTTCACA
Flanking Amino Acid:
ASPNGDYAISVRNGPESGSK
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.7
0.62
0.8
71.8
32.7
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
68
0.56
1.8
74.81
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015087
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015771
173035051 - 173046894
11844