About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173037652_173038628_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
173037652 - 173038628
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGAATAAAT
Flanking Amino Acid:
ITSQGYEQICKSIQLQLNIG
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
69.8
0.45
1
70.3
34.1
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
48.6
-0
2.3
79.82
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015087
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015771
173035051 - 173046894
11844