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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173038767_173039317_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
173038767 - 173039317
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGTTAT
U12 Branch Point Sequence:
TTTGGGTGGAAT
Flanking Amino Acid:
KQAKHIFLRRRTARTIDSLA
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
72.3
39.5
Major BPS
57.4
0.18
1.3
49.2
46
Major PPT
84.5
0.78
0.7
77.4
31.3
Minor 5ss
33.1
-1.9
3.2
43.3
44.4
Minor BPS
39.5
-0.7
2.6
64.61
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015087
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015771
173035051 - 173046894
11844