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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173039503_173040472_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173039503 - 173040472
Intron Length:
970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
TGTTTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAA
U12 Branch Point Sequence:
TTTCTCTTACAA
Flanking Amino Acid:
EHNLHQLIRECHKQTLSSTV
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.7
39.8
Major BPS
61.2
0.28
1.1
70.6
34.3
Major PPT
86
0.81
0.8
80.6
37
Minor 5ss
37.1
-1.5
3.3
50.7
45.8
Minor BPS
59.9
0.31
1.7
73.75
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015087
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015771
173035051 - 173046894
11844