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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173042663_173045724_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
173042663 - 173045724
Intron Length:
3062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATGGT
5'SS Class:
major
3'SS Sequence:
CTTTCTTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTGTTTCTAACA
Flanking Amino Acid:
ILGDLSYRSAGSLFLHHGTF
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
71.2
38.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80.8
0.69
0.8
80.8
31.3
Minor 5ss
39.8
-1.1
3.3
58.3
46.4
Minor BPS
58
0.25
1.7
68.12
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015087
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015771
173035051 - 173046894
11844