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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173046509_173046662_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
173046509 - 173046662
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAG
U12 Branch Point Sequence:
TGTGTCTTAGGA
Flanking Amino Acid:
AEPGEAEDEEGLVKFQPSLW
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
49.9
-0
1.7
51.4
46
Major PPT
78.5
0.64
0.8
76.4
32.2
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
49.1
-0
2
63.26
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015087
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015771
173035051 - 173046894
11844