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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173049921_173050526_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173049921 - 173050526
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TCTCACTTAAAG
Flanking Amino Acid:
QKGKAKIHIMPPEFSACPLN
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
78.6
0.64
0.9
73.9
36.8
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
58
0.11
1.7
63.49
43.7

Associated Gene:

Gene:
C11orf54
Ensembl Gene ID:
ENSAPLG00000014882
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015530
173048168 - 173055064
6897