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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173052640_173053442_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173052640 - 173053442
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAAAA
U12 Branch Point Sequence:
AACACCACAATC
Flanking Amino Acid:
YLIPVVQKEKVYDLNTVAKD
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
59.3
0.23
1
65.3
28.1
Major PPT
79.7
0.67
0.9
73.4
37
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
45.6
-0.3
1.8
52.38
38.5

Associated Gene:

Gene:
C11orf54
Ensembl Gene ID:
ENSAPLG00000014882
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015530
173048168 - 173055064
6897