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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173053517_173054184_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
173053517 - 173054184
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTAG
5'SS Class:
major
3'SS Sequence:
TGTATTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
AACATTTTACCA
Flanking Amino Acid:
TKEPFNFPVKGICGKPRIAD
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.2
65.8
42.7
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
82.5
0.73
0.9
73.7
41.7
Minor 5ss
48.7
-0.1
2.6
64.1
47.4
Minor BPS
48.5
-0.1
1.6
54.68
38.3

Associated Gene:

Gene:
C11orf54
Ensembl Gene ID:
ENSAPLG00000014882
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015530
173048168 - 173055064
6897