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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173054284_173055006_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
173054284 - 173055006
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGCCAATAACT
Flanking Amino Acid:
HVPSLEELAGVLQKGLKENF
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.1
0.97
0.7
88.7
26.7
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
57.6
0.32
1.9
80.2
40.9

Associated Gene:

Gene:
C11orf54
Ensembl Gene ID:
ENSAPLG00000014882
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015530
173048168 - 173055064
6897