About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173060549_173060663_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
173060549 - 173060663
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TTGAAAGTAAAT
Flanking Amino Acid:
QVILDSSDSEIGSEYNTAEP
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
86
24.8
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
85
0.79
0.8
77.9
36.6
Minor 5ss
43.1
-0.8
3.1
62.8
42
Minor BPS
41.8
-0.5
2.4
64.49
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031963
173057972 - 173063316
5345