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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173061598_173062978_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
173061598 - 173062978
Intron Length:
1381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTCAATTTAAAT
Flanking Amino Acid:
EGPISPIQEMNDDSSMGADN
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
29.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
84.1
0.77
0.8
81.9
34.4
Minor 5ss
43.2
-0.7
2.7
54.4
36.6
Minor BPS
57.8
0.32
1.7
74.95
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031963
173057972 - 173063316
5345