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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173071670_173072178_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173071670 - 173072178
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTTCTTATTT
Flanking Amino Acid:
NREKAKEFQKKMLEKLRAKK
Intron Amino Acid Position:
1746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
89.3
0.88
0.7
84.8
28.8
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
71.3
0.75
1.5
85.73
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035879
173071352 - 173107948
36597
ENSAPLT00000018999
173071622 - 173109103
37482
ENSAPLT00000015429
173071584 - 173107815
36232