Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173072279_173072394_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

173072279 - 173072394

Intron Length:

116

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTGCAT

5'SS Class:

major

3'SS Sequence:

ATTGTTTTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAC

U12 Branch Point Sequence:

ATTGTTTTGACA

Flanking Amino Acid:

GKVEMHQRTSRLYNQLEEVK

Intron Amino Acid Position:

1712

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.8

0.47

1.1

62.6

43.3

Major BPS

81.4

0.78

0.9

71.3

36.7

Major PPT

76.4

0.59

72.7

41.8

Minor 5ss

31.4

-2.1

3.6

47.4

Minor BPS

63.7

0.42

1.3

71.39

34.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014794

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035879

173071352 - 173107948

36597

ENSAPLT00000018999

173071622 - 173109103

37482

ENSAPLT00000015429

173071584 - 173107815

36232