Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173075517_173080278_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

173075517 - 173080278

Intron Length:

4762

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCTGCT

5'SS Class:

major

3'SS Sequence:

CTTTCCGAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAGAT

U12 Branch Point Sequence:

CTTTCCGAAACA

Flanking Amino Acid:

SSSENNVHFQGSDESFHPLR

Intron Amino Acid Position:

1290

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.2

0.55

1.2

69.9

40.9

Major BPS

67.4

0.43

1.1

63.4

42.8

Major PPT

0.38

62.4

37.6

Minor 5ss

39.8

-1.1

3.4

59.5

44.9

Minor BPS

55.3

0.16

2.3

74.7

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014794

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015429

173071584 - 173107815

36232