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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173088914_173090287_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
173088914 - 173090287
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTAAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATATCTAAACT
Flanking Amino Acid:
TPRSCNVSFAGKTDSVGGES
Intron Amino Acid Position:
1057

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71.2
0.48
1
67.7
41.8
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
65.1
0.55
1.7
81.58
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015429
173071584 - 173107815
36232
ENSAPLT00000035879
173071352 - 173107948
36597
ENSAPLT00000018999
173071622 - 173109103
37482