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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173092708_173093544_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173092708 - 173093544
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAGAAT
5'SS Class:
major
3'SS Sequence:
CAATTTCAATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTCTACTTAAAA
Flanking Amino Acid:
PDQPKEVEQESGSTAVSETR
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
77.1
32.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
60.9
0.25
1
60.6
40
Minor 5ss
27.8
-2.5
3.2
38.7
46.6
Minor BPS
69.2
0.6
1.6
77.86
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018999
173071622 - 173109103
37482
ENSAPLT00000015429
173071584 - 173107815
36232
ENSAPLT00000035879
173071352 - 173107948
36597