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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173093758_173095060_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173093758 - 173095060
Intron Length:
1303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TTTTCCTCAAGT
Flanking Amino Acid:
IRMENERKKLIEQIEQQKQE
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
83.6
0.76
0.8
82
28.5
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
73.2
0.81
1.8
92.41
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015429
173071584 - 173107815
36232
ENSAPLT00000035879
173071352 - 173107948
36597
ENSAPLT00000018999
173071622 - 173109103
37482