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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173095168_173096388_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
173095168 - 173096388
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTATATATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTACAGTTAAAT
Flanking Amino Acid:
QHKNSVCEAEDSVETLEHTA
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
70.7
0.47
1
67.4
43.1
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
48.4
-0
2.3
73.16
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015429
173071584 - 173107815
36232
ENSAPLT00000035879
173071352 - 173107948
36597
ENSAPLT00000018999
173071622 - 173109103
37482