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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173102396_173103711_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173102396 - 173103711
Intron Length:
1316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTAAG
5'SS Class:
strong_major
3'SS Sequence:
AATTGCCTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AAACTATTAATT
Flanking Amino Acid:
YVDREMDGEQPDARLAAEEE
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
75.9
35
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
64.2
0.32
1.1
55.4
44.9
Minor 5ss
29.7
-2.3
2.6
33
42
Minor BPS
54
0.2
1.5
67.27
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015429
173071584 - 173107815
36232
ENSAPLT00000035879
173071352 - 173107948
36597
ENSAPLT00000018999
173071622 - 173109103
37482