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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173103826_173104392_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173103826 - 173104392
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CTGCACTTAATT
Flanking Amino Acid:
LPPPPPHPLENFEAKKIPAV
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
87
27.8
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
87.5
0.84
0.6
81.1
31
Minor 5ss
46.4
-0.4
2.5
62.6
42.2
Minor BPS
62.7
0.48
1.6
74.29
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035879
173071352 - 173107948
36597
ENSAPLT00000018999
173071622 - 173109103
37482
ENSAPLT00000015429
173071584 - 173107815
36232