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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173105433_173106543_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173105433 - 173106543
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AAATCCTGGATT
Flanking Amino Acid:
GEGHRQAKENEPDLEALAKQ
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.2
80.7
33.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.3
0.41
1.1
73
40.8
Minor 5ss
37.4
-1.4
2.6
43.1
36.9
Minor BPS
60.6
0.41
1.4
71.94
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035879
173071352 - 173107948
36597
ENSAPLT00000018999
173071622 - 173109103
37482
ENSAPLT00000015429
173071584 - 173107815
36232