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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173106745_173107681_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
173106745 - 173107681
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGCCTC
5'SS Class:
weak_major
3'SS Sequence:
GCTATTTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
CAAAACATAAAT
Flanking Amino Acid:
ERRRKLRLQQVREQQKYIAL
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
62.5
42.3
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
79.1
0.66
0.9
72.3
37.7
Minor 5ss
50.9
0.03
2.7
68.3
36.6
Minor BPS
44.8
-0.3
1.9
58.86
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035879
173071352 - 173107948
36597
ENSAPLT00000018999
173071622 - 173109103
37482
ENSAPLT00000015429
173071584 - 173107815
36232