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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173122150_173124314_R

Intron Information:

Intron Rank:
153575
Intron Class:
major
Intron Phase:
Intron Coordinates:
173122150 - 173124314
Intron Length:
2165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGACTA
5'SS Class:
major
3'SS Sequence:
TCTATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTGCAAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.7
36.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
88.7
0.87
0.7
84.1
30.7
Minor 5ss
38
-1.4
3.3
53
43.9
Minor BPS
47.1
-0.3
2.3
63.85
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030097
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018265
173121990 - 173124854
2865