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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173122150_173128513_R

Intron Information:

Intron Rank:
153576
Intron Class:
major
Intron Phase:
Intron Coordinates:
173122150 - 173128513
Intron Length:
6364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTGCAAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
88.7
0.87
0.7
84.1
30.7
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
47.1
-0.3
2.3
63.85
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030097
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042570
173121990 - 173134221
12232
ENSAPLT00000024334
173121990 - 173130736
8747