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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173128592_173134047_R

Intron Information:

Intron Rank:
153579
Intron Class:
major
Intron Phase:
Intron Coordinates:
173128592 - 173134047
Intron Length:
5456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTAACCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTGTTCTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
74.1
0.54
0.9
65.8
35.6
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
84.3
1.06
1
85.8
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030097
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042570
173121990 - 173134221
12232