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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173137568_173144459_F

Intron Information:

Intron Rank:
132754
Intron Class:
major
Intron Phase:
Intron Coordinates:
173137568 - 173144459
Intron Length:
6892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGGACT
5'SS Class:
major
3'SS Sequence:
CCACGTCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AGCATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
69.8
40.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.2
0.48
0.9
61
40
Minor 5ss
36.2
-1.6
3.2
46.7
42.5
Minor BPS
47.7
-0
1.5
58.76
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021359
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036254
173137258 - 173144743
7486